TCGA Luminal A breast cancer dataset (transcript-level)

Data from The Cancer Genome Atlas, containing transcript-level read counts of 20 patients with Luminal A type breast cancer (primary tumor and solid normal samples, 40 samples total). The dataset includes transcript IDs in the first column and read counts for 40 samples in subsequent columns.

Usage

data(tcga_brca_luma)

Format

A data frame with 1100 rows and 41 columns. The first column contains transcript IDs, all additional columns contain RNA-sequencing read counts for samples.

Source

TCGA via GDC

References

The Cancer Genome Atlas Network (2012) Nature 490, 61–70 doi:10.1038/nature11412

Examples

data(tcga_brca_luma)
dim(tcga_brca_luma)
#> [1] 1100   41
head(tcga_brca_luma[1:4, 1:3])
#>   Transcript TCGA-A7-A0CH_N TCGA-A7-A0CH_T
#> 1    MXRA8.1        2858.04         743.56
#> 2    MXRA8.2         127.82          21.28
#> 3    MXRA8.3         370.22          94.38
#> 4    MXRA8.4        7472.00        3564.87